classix.CLASSIX.visualize_linkage

CLASSIX.visualize_linkage(scale=1.5, figsize=(10, 7), labelsize=24, markersize=320, plot_boundary=False, bound_color='red', path='.', fmt='pdf')

Visualize the linkage in the distance clustering.

Parameters

scalefloat

Design for distance-clustering, when distance between the two group centers associated with two distinct groups smaller than scale*radius, then the two groups merge.

labelsizeint

The fontsize of ticks.

markersizeint

The size of the markers for group centers.

plot_boundaryboolean

If it is true, will plot the boundary of groups for the group centers.

bound_colorstr

The color for the boundary for groups with the specified radius.

pathstr

Relative file location for figure storage.

fmtstr

Specify the format of the image to be saved, default as ‘pdf’, other choice: png.